STRINGSTRING
Bra001708 protein (Brassica rapa) - STRING interaction network
"Bra001708" - AT3G18520 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001708AT3G18520 (E=4e-048) HDA15, ATHDA15 | HDA15; histone deacetylase (417 aa)    
Predicted Functional Partners:
Bra039916
AT2G18090 (E=6e-020) | PHD finger family protein / SWIB complex BAF60b domain-containing protein / GYF domain-containing protein (144 aa)
   
  0.977
Bra039210
AT2G23740 (E=5e-041) | nucleic acid binding / transcription factor/ zinc ion binding (306 aa)
   
  0.975
Bra018072
AT5G35600 (E=9e-136) HDA7 | HDA7 (histone deacetylase7); histone deacetylase (442 aa)
   
 
  0.974
Bra019516
AT5G35600 (E=2e-137) HDA7 | HDA7 (histone deacetylase7); histone deacetylase (401 aa)
   
 
  0.973
Bra018073
AT5G35600 (E=1e-142) HDA7 | HDA7 (histone deacetylase7); histone deacetylase (399 aa)
   
 
  0.973
Bra032148
AT2G23740 (E=0.0) | nucleic acid binding / transcription factor/ zinc ion binding (1366 aa)
   
  0.969
HD1
AT4G38130 (E=8e-284) HD1, HDA19, ATHD1, HDA1, RPD3A | HD1 (HISTONE DEACETYLASE 1); basal transcription repressor/ histone deacetylase/ protein binding (502 aa)
   
 
0.935
Bra038607
AT5G63110 (E=5e-261) HDA6, AXE1, ATHDA6, RTS1, RPD3B, SIL1 | HDA6 (HISTONE DEACETYLASE 6); histone deacetylase (570 aa)
   
 
0.935
Bra035858
AT5G63110 (E=7e-251) HDA6, AXE1, ATHDA6, RTS1, RPD3B, SIL1 | HDA6 (HISTONE DEACETYLASE 6); histone deacetylase (470 aa)
   
 
0.934
Bra019424
AT3G44680 (E=5e-253) HDA9, HDA09 | HDA9 (HISTONE DEACETYLASE 9); histone deacetylase (426 aa)
   
 
0.934
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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