STRINGSTRING
Bra001709 protein (Brassica rapa) - STRING interaction network
"Bra001709" - AT3G18524 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001709AT3G18524 (E=0.0) MSH2, ATMSH2 | MSH2 (MUTS HOMOLOG 2); ATP binding / damaged DNA binding / mismatched DNA binding / protein binding ; Component of the post-replicative DNA mismatch repair system (MMR) (937 aa)    
Predicted Functional Partners:
Bra000674
AT4G09140 (E=0.0) ATMLH1, MLH1 | MLH1 (MUTL-HOMOLOGUE 1); protein binding, bridging (749 aa)
 
  0.994
Bra028373
AT3G24495 (E=0.0) MSH7, MSH6-2, ATMSH7 | MSH7 (MUTS HOMOLOG 7); ATP binding / damaged DNA binding / mismatched DNA binding (1109 aa)
   
0.992
Bra000896
AT4G02070 (E=0.0) MSH6, MSH6-1, ATMSH6 | MSH6 (MUTS HOMOLOG 6); damaged DNA binding ; Component of the post-replicative DNA mismatch repair system (MMR) (1337 aa)
   
0.992
Bra015033
AT3G24320 (E=0.0) MSH1, CHM1, ATMSH1, CHM | MSH1 (MUTL PROTEIN HOMOLOG 1); ATP binding / catalytic/ damaged DNA binding / mismatched DNA binding / nuclease (1122 aa)
     
0.990
Bra018549
AT4G02460 (E=0.0) PMS1 | PMS1 (POSTMEIOTIC SEGREGATION 1); ATP binding / mismatched DNA binding (1123 aa)
   
  0.990
Bra031571
AT1G07370 (E=5e-142) PCNA1 | PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN); DNA binding / DNA polymerase processivity factor/ protein binding ; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (263 aa)
     
  0.984
Bra018377
AT1G07370 (E=2e-144) PCNA1 | PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN); DNA binding / DNA polymerase processivity factor/ protein binding ; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (263 aa)
     
  0.984
Bra030153
AT1G29630 (E=0.0) | DNA binding / catalytic/ nuclease (693 aa)
   
  0.982
Bra017718
AT4G35520 (E=0.0) MLH3, ATMLH3 | MLH3 (MUTL PROTEIN HOMOLOG 3); ATP binding / mismatched DNA binding (1211 aa)
   
  0.979
Bra016569
AT1G18090 (E=3e-255) | exonuclease, putative (576 aa)
   
  0.978
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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