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Bra001711 protein (Brassica rapa) - STRING interaction network
"Bra001711" - AT3G18570 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001711AT3G18570 (E=5e-049) | glycine-rich protein / oleosin (176 aa)    
Predicted Functional Partners:
Bra010474
AT4G25140 (E=4e-064) OLEO1, OLE1 | OLEO1 (OLEOSIN 1) (180 aa)
     
   
0.910
Bra013866
AT4G25140 (E=9e-055) OLEO1, OLE1 | OLEO1 (OLEOSIN 1) (195 aa)
     
   
0.905
Bra013228
AT3G25160 (E=2e-136) | ER lumen protein retaining receptor family protein (272 aa)
     
   
  0.504
Bra001002
AT3G01570 (E=5e-071) | glycine-rich protein / oleosin (193 aa)
     
   
  0.484
Bra015106
AT3G25160 (E=3e-139) | ER lumen protein retaining receptor family protein (272 aa)
     
   
  0.477
Bra040216
AT3G05500 (E=1e-126) | rubber elongation factor (REF) family protein (246 aa)
           
  0.406
Bra022366
AT3G18860 (E=0.0) | transducin family protein / WD-40 repeat family protein (760 aa)
           
  0.406
Bra001726
AT3G18860 (E=3e-271) | transducin family protein / WD-40 repeat family protein (744 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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