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Bra001712 protein (Brassica rapa) - STRING interaction network
"Bra001712" - AT3G18590 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001712AT3G18590 (E=6e-071) | plastocyanin-like domain-containing protein (185 aa)    
Predicted Functional Partners:
Bra025919
AT1G18280 (E=2e-037) | protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (179 aa)
     
   
  0.448
Bra016563
AT1G18280 (E=5e-045) | protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (175 aa)
     
   
  0.448
Bra009589
AT3G45100 (E=2e-218) SETH2 | SETH2; transferase, transferring glycosyl groups (429 aa)
           
  0.414
Bra005376
AT2G34980 (E=4e-112) SETH1 | SETH1; phosphatidylinositol N-acetylglucosaminyltransferase/ transferase (312 aa)
           
  0.412
Bra031024
AT1G18280 (E=4e-038) | protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (181 aa)
     
   
  0.405
Bra031023
AT1G18280 (E=2e-029) | protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (158 aa)
     
   
  0.405
Bra031022
AT1G18280 (E=3e-043) | protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (186 aa)
     
   
  0.405
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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