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Bra001713 protein (Brassica rapa) - STRING interaction network
"Bra001713" - AT3G18600 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001713AT3G18600 (E=3e-143) | DEAD/DEAH box helicase, putative (606 aa)    
Predicted Functional Partners:
Bra036111
AT5G27120 (E=2e-232) | SAR DNA-binding protein, putative (536 aa)
     
  0.989
Bra020601
AT5G27120 (E=3e-109) | SAR DNA-binding protein, putative (488 aa)
     
  0.989
Bra009978
AT5G27120 (E=4e-233) | SAR DNA-binding protein, putative (537 aa)
     
  0.989
Bra006260
AT5G14520 (E=9e-275) | pescadillo-related ; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (592 aa)
     
 
  0.988
Bra040357
AT3G07050 (E=1e-165) | GTP-binding family protein (615 aa)
   
 
  0.987
Bra029617
AT3G07050 (E=4e-230) | GTP-binding family protein (594 aa)
   
 
  0.987
Bra001232
AT3G07050 (E=2e-216) | GTP-binding family protein (584 aa)
   
 
  0.987
Bra000863
AT4G02790 (E=5e-172) | GTP-binding family protein (370 aa)
   
 
  0.987
Bra038492
AT4G16630 (E=5e-153) | DEAD/DEAH box helicase, putative (RH28) (908 aa)
   
 
0.986
Bra040743
AT4G16630 (E=2e-266) | DEAD/DEAH box helicase, putative (RH28) (874 aa)
   
 
0.986
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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