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Bra001714 protein (Brassica rapa) - STRING interaction network
"Bra001714" - AT3G18620 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001714AT3G18620 (E=4e-180) | zinc finger (DHHC type) family protein (342 aa)    
Predicted Functional Partners:
Bra033277
AT1G01200 (E=9e-116) ATRABA3, ATRAB-A3 | ATRABA3 (ARABIDOPSIS RAB GTPASE HOMOLOG A3); GTP binding (237 aa)
       
 
  0.510
Bra026314
AT4G27700 (E=4e-096) | rhodanese-like domain-containing protein (226 aa)
           
  0.426
Bra019187
AT4G25130 (E=4e-114) | peptide methionine sulfoxide reductase, putative (254 aa)
           
  0.426
Bra013865
AT4G25130 (E=3e-113) | peptide methionine sulfoxide reductase, putative (256 aa)
           
  0.426
Bra013761
AT4G24090 (E=1e-124) | unknown protein (314 aa)
           
  0.426
Bra015156
AT2G04890 (E=2e-163) SCL21 | SCL21 (SCARECROW-LIKE 21); transcription factor (318 aa)
           
  0.408
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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