STRINGSTRING
Bra001715 protein (Brassica rapa) - STRING interaction network
"Bra001715" - AT3G18680 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001715AT3G18680 (E=1e-152) | aspartate/glutamate/uridylate kinase family protein (334 aa)    
Predicted Functional Partners:
Bra032986
AT3G27190 (E=8e-255) | uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative (483 aa)
   
 
  0.953
Bra030832
AT1G55810 (E=1e-152) | uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative (450 aa)
   
 
  0.953
Bra026427
AT4G26510 (E=5e-253) | ATP binding / kinase/ phosphotransferase, alcohol group as acceptor / uracil phosphoribosyltransferase (470 aa)
   
 
  0.953
Bra025537
AT5G40870 (E=1e-237) AtUK/UPRT1 | AtUK/UPRT1 (Uridine kinase/Uracil phosphoribosyltransferase 1); ATP binding / kinase/ uracil phosphoribosyltransferase/ uridine kinase (480 aa)
   
 
  0.953
Bra025256
AT3G27190 (E=3e-253) | uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative (483 aa)
   
 
  0.953
Bra002854
AT4G26510 (E=3e-244) | ATP binding / kinase/ phosphotransferase, alcohol group as acceptor / uracil phosphoribosyltransferase (468 aa)
   
 
  0.953
Bra014814
AT3G54470 (E=7e-216) | uridine 5’-monophosphate synthase / UMP synthase (PYRE-F) (UMPS) (474 aa)
   
 
  0.952
Bra003186
AT3G54470 (E=9e-235) | uridine 5’-monophosphate synthase / UMP synthase (PYRE-F) (UMPS) (469 aa)
   
 
  0.952
Bra039077
AT3G27440 (E=4e-243) | uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative (788 aa)
   
 
  0.940
Bra031978
AT3G03710 (E=0.0) RIF10 | RIF10 (resistant to inhibition with FSM 10); 3’-5’-exoribonuclease/ RNA binding / nucleic acid binding / polyribonucleotide nucleotidyltransferase (866 aa)
   
 
  0.926
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (38%) [HD]