STRINGSTRING
Bra001716 protein (Brassica rapa) - STRING interaction network
"Bra001716" - AT3G18690 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001716AT3G18690 (E=2e-084) MKS1 | MKS1 (MAP kinase substrate 1); protein binding (214 aa)    
Predicted Functional Partners:
Bra000955
AT4G01370 (E=3e-213) ATMPK4, MPK4 | ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4); MAP kinase/ kinase (373 aa)
       
 
  0.731
Bra017117
AT2G38470 (E=1e-091) WRKY33, ATWRKY33 | WRKY33; transcription factor (463 aa)
     
 
  0.687
Bra005104
AT2G38470 (E=3e-093) WRKY33, ATWRKY33 | WRKY33; transcription factor (457 aa)
     
 
  0.687
Bra000064
AT2G38470 (E=4e-154) WRKY33, ATWRKY33 | WRKY33; transcription factor (473 aa)
     
 
  0.687
Bra022786
AT2G30250 (E=3e-172) WRKY25, ATWRKY25 | WRKY25; transcription factor (378 aa)
       
 
  0.684
Bra018325
AT2G30250 (E=8e-153) WRKY25, ATWRKY25 | WRKY25; transcription factor (373 aa)
       
 
  0.684
Bra004784
AT2G43790 (E=1e-220) ATMPK6, MPK6, MAPK6 | ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6); MAP kinase/ kinase (392 aa)
       
 
  0.424
Bra000326
AT2G43790 (E=5e-219) ATMPK6, MPK6, MAPK6 | ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6); MAP kinase/ kinase (395 aa)
       
 
  0.424
Bra030082
AT1G28280 (E=2e-101) | VQ motif-containing protein (244 aa)
     
   
  0.403
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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