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Bra001720 protein (Brassica rapa) - STRING interaction network
"Bra001720" - AT3G18760 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001720AT3G18760 (E=9e-060) | ribosomal protein S6 family protein (134 aa)    
Predicted Functional Partners:
Bra040978
ATCG00740 (E=1e-124) RPOA | RNA polymerase alpha subunit (475 aa)
     
  0.999
Bra031557
AT1G07210 (E=5e-071) | 30S ribosomal protein S18 family (237 aa)
   
  0.999
Bra015562
AT1G07210 (E=8e-078) | 30S ribosomal protein S18 family (279 aa)
   
  0.999
Bra040980
ATCG00780 (E=1e-038) RPL14 | encodes a chloroplast ribosomal protein L14, a constituent of the large subunit of the ribosomal complex (171 aa)
     
 
  0.990
Bra018009
AT3G49080 (E=1e-109) | ribosomal protein S9 family protein (406 aa)
     
  0.989
Bra015878
AT1G74970 (E=2e-086) RPS9, TWN3 | RPS9 (RIBOSOMAL PROTEIN S9); structural constituent of ribosome (211 aa)
     
  0.989
Bra003776.1-P
AT1G74970 (E=3e-077) RPS9, TWN3 | RPS9 (RIBOSOMAL PROTEIN S9); structural constituent of ribosome (145 aa)
     
  0.989
Bra041038
ATCG00160 (E=5e-090) RPS2 | Chloroplast ribosomal protein S2 (206 aa)
     
  0.989
Bra031984
AT3G03600 (E=1e-111) RPS2 | RPS2 (RIBOSOMAL PROTEIN S2); structural constituent of ribosome (207 aa)
     
  0.989
Bra039370
AT3G13120 (E=1e-059) | 30S ribosomal protein S10, chloroplast, putative (205 aa)
     
  0.984
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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