STRINGSTRING
Bra001724 protein (Brassica rapa) - STRING interaction network
"Bra001724" - AT3G18820 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001724AT3G18820 (E=7e-114) ATRABG3F, ATRAB7B, RAB71, RABG3F, RAB7B | ATRAB7B (ARABIDOPSIS RAB GTPASE HOMOLOG G3F); GTP binding (206 aa)    
Predicted Functional Partners:
Bra011952
AT2G28390 (E=2e-238) | SAND family protein (567 aa)
     
 
  0.945
Bra000494
AT2G28390 (E=1e-272) | SAND family protein (581 aa)
     
 
  0.945
Bra028630
AT5G09550 (E=3e-248) | RAB GDP-dissociation inhibitor (613 aa)
     
 
  0.799
Bra014523
AT3G59920 (E=1e-250) ATGDI2 | ATGDI2 (RAB GDP DISSOCIATION INHIBITOR 2); RAB GDP-dissociation inhibitor (444 aa)
     
 
  0.799
Bra009390
AT5G09550 (E=2e-249) | RAB GDP-dissociation inhibitor (445 aa)
     
 
  0.799
Bra007493
AT3G59920 (E=1e-239) ATGDI2 | ATGDI2 (RAB GDP DISSOCIATION INHIBITOR 2); RAB GDP-dissociation inhibitor (445 aa)
     
 
  0.799
Bra007490
AT3G59920 (E=5e-064) ATGDI2 | ATGDI2 (RAB GDP DISSOCIATION INHIBITOR 2); RAB GDP-dissociation inhibitor (406 aa)
     
 
  0.799
Bra006026
AT5G09550 (E=5e-234) | RAB GDP-dissociation inhibitor (439 aa)
     
 
  0.799
Bra004805
AT2G44100 (E=2e-252) ATGDI1, AT-GDI1 | ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1); RAB GDP-dissociation inhibitor (444 aa)
     
 
  0.799
Bra003395
AT3G59920 (E=4e-243) ATGDI2 | ATGDI2 (RAB GDP DISSOCIATION INHIBITOR 2); RAB GDP-dissociation inhibitor (444 aa)
     
 
  0.799
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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