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Bra001728 protein (Brassica rapa) - STRING interaction network
"Bra001728" - AT3G18950 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001728AT3G18950 (E=5e-208) | transducin family protein / WD-40 repeat family protein (459 aa)    
Predicted Functional Partners:
Bra040834
AT3G22590 (E=1e-202) | RNA pol II accessory factor Cdc73 family protein (411 aa)
     
  0.970
Bra009582
AT1G79730 (E=7e-208) ELF7 | ELF7 (EARLY FLOWERING 7) (576 aa)
     
  0.970
Bra015729
AT1G76630 (E=3e-248) | tetratricopeptide repeat (TPR)-containing protein (1154 aa)
       
 
  0.948
Bra013162
AT2G06210 (E=3e-294) ELF8, VIP6 | ELF8 (EARLY FLOWERING 8); binding (1051 aa)
       
  0.933
Bra035940
AT5G61150 (E=4e-166) VIP4 | VIP4 (VERNALIZATION INDEPENDENCE 4); protein binding (622 aa)
       
  0.896
Bra029332
AT5G61150 (E=6e-163) VIP4 | VIP4 (VERNALIZATION INDEPENDENCE 4); protein binding (626 aa)
       
  0.896
Bra040091
AT3G26560 (E=5e-178) | ATP-dependent RNA helicase, putative (791 aa)
       
 
  0.886
Bra025211
AT3G26560 (E=0.0) | ATP-dependent RNA helicase, putative (1171 aa)
       
 
  0.886
Bra033055
AT3G28730 (E=9e-172) ATHMG, SSRP1, NFD | ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP); transcription factor (623 aa)
     
 
    0.865
Bra025350
AT3G28730 (E=2e-239) ATHMG, SSRP1, NFD | ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP); transcription factor (658 aa)
     
 
    0.865
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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