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Bra001733 protein (Brassica rapa) - STRING interaction network
"Bra001733" - AT3G19090 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001733AT3G19090 (E=4e-163) | RNA-binding protein, putative (458 aa)    
Predicted Functional Partners:
Bra034603
AT4G34110 (E=4e-269) PAB2, PABP2, ATPAB2 | PAB2 (POLY(A) BINDING 2); RNA binding / translation initiation factor ; Binds the poly(A) tail of mRNA (619 aa)
     
 
  0.614
Bra011488
AT4G34110 (E=2e-264) PAB2, PABP2, ATPAB2 | PAB2 (POLY(A) BINDING 2); RNA binding / translation initiation factor ; Binds the poly(A) tail of mRNA (613 aa)
     
 
  0.614
Bra018797
AT1G49760 (E=1e-266) PAB8, PABP8 | PAB8 (POLY(A) BINDING PROTEIN 8); RNA binding / translation initiation factor ; Binds the poly(A) tail of mRNA (653 aa)
     
 
  0.469
Bra013104
AT4G34110 (E=3e-255) PAB2, PABP2, ATPAB2 | PAB2 (POLY(A) BINDING 2); RNA binding / translation initiation factor ; Binds the poly(A) tail of mRNA (616 aa)
     
 
  0.469
Bra027835
AT1G59760 (E=0.0) | ATP-dependent RNA helicase, putative (956 aa)
           
  0.455
Bra022090
AT5G47000 (E=9e-169) | peroxidase, putative (331 aa)
           
  0.418
Bra035426
AT1G59760 (E=0.0) | ATP-dependent RNA helicase, putative (620 aa)
           
  0.410
Bra031125
AT2G20490 (E=3e-030) NOP10, EDA27 | NOP10; RNA binding (64 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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