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Bra001738 protein (Brassica rapa) - STRING interaction network
"Bra001738" - AT3G19170 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001738AT3G19170 (E=0.0) ATPREP1, ATZNMP | ATPREP1 (PRESEQUENCE PROTEASE 1); metalloendopeptidase (1074 aa)    
Predicted Functional Partners:
Bra036771
AT1G36160 (E=0.0) ACC1, AT-ACC1, EMB22, GK, PAS3 | ACC1 (ACETYL-COENZYME A CARBOXYLASE 1); acetyl-CoA carboxylase (2233 aa)
     
      0.855
Bra018702
AT1G36180 (E=0.0) ACC2 | ACC2 (ACETYL-COA CARBOXYLASE 2); acetyl-CoA carboxylase (2310 aa)
     
      0.855
Bra039444
AT3G05350 (E=0.0) | aminopeptidase/ hydrolase (696 aa)
   
      0.635
Bra011704
AT4G36760 (E=2e-250) ATAPP1, APP1 | ATAPP1; N-1-naphthylphthalamic acid binding / aminopeptidase (620 aa)
   
      0.635
Bra010574
AT4G36760 (E=0.0) ATAPP1, APP1 | ATAPP1; N-1-naphthylphthalamic acid binding / aminopeptidase (640 aa)
   
      0.635
Bra035715
AT5G50850 (E=4e-182) MAB1 | MAB1 (MACCI-BOU); catalytic/ pyruvate dehydrogenase (acetyl-transferring) (453 aa)
     
      0.624
Bra032361.1-P
AT2G34590 (E=3e-169) | transketolase family protein (307 aa)
     
      0.624
Bra026451
AT5G50850 (E=2e-121) MAB1 | MAB1 (MACCI-BOU); catalytic/ pyruvate dehydrogenase (acetyl-transferring) (345 aa)
     
      0.624
Bra022757
AT5G50850 (E=2e-186) MAB1 | MAB1 (MACCI-BOU); catalytic/ pyruvate dehydrogenase (acetyl-transferring) (367 aa)
     
      0.624
Bra022529
AT5G50850 (E=2e-186) MAB1 | MAB1 (MACCI-BOU); catalytic/ pyruvate dehydrogenase (acetyl-transferring) (366 aa)
     
      0.624
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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