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Bra001740 protein (Brassica rapa) - STRING interaction network
"Bra001740" - AT3G19260 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001740AT3G19260 (E=7e-138) LAG1 HOMOLOG 2, LOH2 | LOH2 (LAG ONE HOMOLOGUE 2) (352 aa)    
Predicted Functional Partners:
Bra029531
AT4G04930 (E=9e-180) DES-1-LIKE | DES-1-LIKE; oxidoreductase/ sphingolipid delta-4 desaturase (334 aa)
         
  0.940
Bra020781
AT3G06060 (E=1e-144) | short-chain dehydrogenase/reductase (SDR) family protein (323 aa)
         
  0.940
Bra029178
AT5G51290 (E=2e-309) | ceramide kinase-related (594 aa)
     
 
  0.938
Bra019665
AT1G14290 (E=5e-143) SBH2 | SBH2 (SPHINGOID BASE HYDROXYLASE 2); catalytic/ sphingosine hydroxylase (261 aa)
       
  0.936
Bra007872
AT1G69640 (E=2e-134) SBH1 | SBH1 (SPHINGOID BASE HYDROXYLASE 1); catalytic/ sphingosine hydroxylase (259 aa)
       
  0.932
Bra004404
AT1G69640 (E=3e-125) SBH1 | SBH1 (SPHINGOID BASE HYDROXYLASE 1); catalytic/ sphingosine hydroxylase (261 aa)
       
  0.932
Bra020895
AT4G21540 (E=2e-124) SPHK1 | SPHK1 (SPHINGOSINE KINASE 1); D-erythro-sphingosine kinase/ diacylglycerol kinase/ sphinganine kinase (453 aa)
     
 
  0.929
Bra014964
AT3G24180 (E=0.0) | catalytic/ glucosylceramidase ; Non-lysosomal glucosylceramidase that catalyzes the conversion of glucosylceramide to free glucose and ceramide (946 aa)
         
  0.892
Bra000598
AT5G49900 (E=0.0) | catalytic/ glucosylceramidase ; Non-lysosomal glucosylceramidase that catalyzes the conversion of glucosylceramide to free glucose and ceramide (918 aa)
         
  0.808
Bra003339
AT3G58490 (E=1e-214) | phosphatidic acid phosphatase family protein / PAP2 family protein (411 aa)
       
  0.798
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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