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Bra001744 protein (Brassica rapa) - STRING interaction network
"Bra001744" - AT1G49760 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001744AT1G49760 (E=5e-018) PAB8, PABP8 | PAB8 (POLY(A) BINDING PROTEIN 8); RNA binding / translation initiation factor (124 aa)    
Predicted Functional Partners:
Bra025932
AT1G61480 (E=0.0) | S-locus protein kinase, putative (1348 aa)
     
  0.976
Bra016571
AT1G18070 (E=7e-207) | EF-1-alpha-related GTP-binding protein, putative (709 aa)
     
  0.976
Bra000894
AT1G61580 (E=2e-061) RPL3B, ARP2 | RPL3B (R-PROTEIN L3 B); structural constituent of ribosome (999 aa)
     
  0.971
Bra037969
AT1G54170 (E=4e-192) CID3 | CID3 (CTC-Interacting Domain 3) (594 aa)
     
 
  0.942
Bra021526
AT3G14010 (E=3e-158) CID4 | CID4 (CTC-Interacting Domain 4); protein binding (641 aa)
     
 
  0.942
Bra014367
AT1G54170 (E=7e-119) CID3 | CID3 (CTC-Interacting Domain 3) (538 aa)
     
 
  0.942
Bra001533
AT3G14010 (E=4e-124) CID4 | CID4 (CTC-Interacting Domain 4); protein binding (1029 aa)
     
 
  0.942
Bra020407
AT5G57870 (E=0.0) | eukaryotic translation initiation factor 4F, putative / eIF-4F, putative (770 aa)
     
  0.914
Bra011218
AT2G24050 (E=8e-107) | MIF4G domain-containing protein / MA3 domain-containing protein (547 aa)
     
  0.914
Bra010275
AT4G30770 (E=5e-060) | unknown protein (445 aa)
     
  0.914
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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