STRINGSTRING
Bra001746 protein (Brassica rapa) - STRING interaction network
"Bra001746" - AT3G19490 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001746AT3G19490 (E=1e-228) ATNHD1, NHD1 | ATNHD1; potassium-hydrogen antiporter/ sodium-hydrogen antiporter (575 aa)    
Predicted Functional Partners:
Bra027795
AT1G63660 (E=6e-286) | GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative (530 aa)
         
  0.561
Bra039992
AT1G25490 (E=1e-062) RCN1, REGA, ATB BETA BETA, EER1 | RCN1 (ROOTS CURL IN NPA); protein phosphatase type 2A regulator (133 aa)
       
      0.499
Bra035030
AT1G25490 (E=2e-062) RCN1, REGA, ATB BETA BETA, EER1 | RCN1 (ROOTS CURL IN NPA); protein phosphatase type 2A regulator (156 aa)
       
      0.499
Bra025162
AT3G25800 (E=3e-214) PDF1, PR 65, PP2AA2 | PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2); protein phosphatase type 2A regulator (770 aa)
       
      0.499
Bra024741
AT1G25490 (E=8e-176) RCN1, REGA, ATB BETA BETA, EER1 | RCN1 (ROOTS CURL IN NPA); protein phosphatase type 2A regulator (329 aa)
       
      0.499
Bra017348
AT3G25800 (E=1e-055) PDF1, PR 65, PP2AA2 | PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2); protein phosphatase type 2A regulator (259 aa)
       
      0.499
Bra012474
AT1G25490 (E=0.0) RCN1, REGA, ATB BETA BETA, EER1 | RCN1 (ROOTS CURL IN NPA); protein phosphatase type 2A regulator (586 aa)
       
      0.499
Bra010996
AT1G25490 (E=0.0) RCN1, REGA, ATB BETA BETA, EER1 | RCN1 (ROOTS CURL IN NPA); protein phosphatase type 2A regulator (588 aa)
       
      0.499
Bra008635
AT5G16210 (E=3e-081) | HEAT repeat-containing protein (325 aa)
       
      0.499
Bra019425
AT3G44620 (E=9e-105) | protein tyrosine phosphatase (232 aa)
   
   
  0.480
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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