STRINGSTRING
Bra001763 protein (Brassica rapa) - STRING interaction network
"Bra001763" - AT3G19920 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001763AT3G19920 (E=5e-179) | unknown protein (416 aa)    
Predicted Functional Partners:
Bra018738
AT1G48580 (E=4e-059) | unknown protein (455 aa)
           
  0.605
Bra003528
AT1G79760 (E=3e-109) DTA4 | DTA4 (DOWNSTREAM TARGET OF AGL15-4) (315 aa)
           
  0.582
Bra037180
AT5G66230 (E=6e-098) | unknown protein (322 aa)
           
  0.581
Bra010619
AT4G37900 (E=2e-286) | glycine-rich protein (784 aa)
           
  0.489
Bra011785
AT4G37780 (E=4e-114) MYB87, ATMYB87 | MYB87 (MYB DOMAIN PROTEIN 87); DNA binding / transcription factor (305 aa)
           
  0.475
Bra036316
AT4G01700 (E=3e-135) | chitinase, putative (279 aa)
           
  0.456
Bra022221
AT3G17520 (E=1e-077) | late embryogenesis abundant domain-containing protein / LEA domain-containing protein (298 aa)
     
   
  0.435
Bra020188
AT5G22380 (E=3e-121) anac090 | anac090 (Arabidopsis NAC domain containing protein 90); transcription factor (235 aa)
           
  0.406
Bra014407
AT3G62230 (E=2e-109) | F-box family protein (466 aa)
           
  0.406
Bra009225
AT5G06760 (E=3e-038) | late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing protein (159 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (9%) [HD]