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Bra001770 protein (Brassica rapa) - STRING interaction network
"Bra001770" - AT3G19980 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
Bra001770AT3G19980 (E=1e-178) ATFYPP3, EMB2736, STPP | ATFYPP3 (FLOWER-SPECIFIC, PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3); protein binding / protein serine/threonine kinase/ protein serine/threonine phosphatase (303 aa)    
Predicted Functional Partners:
Bra011516
AT4G34270 (E=1e-125) | TIP41-like family protein (306 aa)
       
 
  0.483
Bra038298
AT3G45190 (E=3e-211) | SIT4 phosphatase-associated family protein (816 aa)
       
  0.458
Bra035706
AT2G28360 (E=7e-283) | INVOLVED IN- biological_process unknown; LOCATED IN- endomembrane system; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- SIT4 phosphatase-associated protein (InterPro-IPR007587); BEST Arabidopsis thaliana protein match is- SIT4 phosphatase-associated family protein (TAIR-AT1G07990.1); Has 1431 Blast hits to 1107 proteins in 182 species- Archae - 2; Bacteria - 108; Metazoa - 552; Fungi - 305; Plants - 89; Viruses - 18; Other Eukaryotes - 357 (source- NCBI BLink). (767 aa)
       
  0.458
Bra033843
AT3G45190 (E=9e-100) | SIT4 phosphatase-associated family protein (635 aa)
       
  0.458
Bra032392
AT4G21380 (E=3e-310) ARK3 | ARK3 (A. THALIANA RECEPTOR KINASE 3); kinase/ transmembrane receptor protein serine/threonine kinase (1829 aa)
       
  0.458
Bra031607
AT1G07990 (E=6e-281) | SIT4 phosphatase-associated family protein (898 aa)
       
  0.458
Bra030708
AT1G07990 (E=0.0) | SIT4 phosphatase-associated family protein (804 aa)
       
  0.458
Bra030707
AT5G60390 (E=1e-255) | elongation factor 1-alpha / EF-1-alpha ; This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis (590 aa)
       
  0.458
Bra018667
AT1G07985 (E=8e-028) | Expressed protein (141 aa)
       
  0.458
Bra018666
AT3G45190 (E=1e-232) | SIT4 phosphatase-associated family protein (871 aa)
       
  0.458
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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