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Bra001771 protein (Brassica rapa) - STRING interaction network
"Bra001771" - AT3G20010 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001771AT3G20010 (E=8e-275) | SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein (825 aa)    
Predicted Functional Partners:
Bra037372
AT5G57450 (E=2e-052) XRCC3, ATXRCC3 | XRCC3; ATP binding / damaged DNA binding / protein binding / single-stranded DNA binding (259 aa)
       
 
  0.620
Bra006820
AT5G57450 (E=3e-126) XRCC3, ATXRCC3 | XRCC3; ATP binding / damaged DNA binding / protein binding / single-stranded DNA binding (331 aa)
       
 
  0.620
Bra010976
AT1G24706 (E=0.0) | unknown protein (1816 aa)
       
      0.612
Bra039413
AT3G05740 (E=4e-287) RECQI1 | RECQI1 (Arabidopsis RecQ helicase l1); ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding (610 aa)
       
 
  0.605
Bra038422
AT1G31360 (E=0.0) RECQL2, ATRECQ2 | RECQL2 (ARABIDOPSIS RECQ HELICASE L2); 3’-5’ DNA helicase/ ATP-dependent helicase/ four-way junction helicase/ protein binding (705 aa)
       
 
  0.605
Bra032447
AT1G05950 (E=5e-040) | unknown protein (208 aa)
       
 
  0.605
Bra032446
AT1G05950 (E=2e-036) | unknown protein (301 aa)
       
 
  0.605
Bra031741
AT1G10930 (E=0.0) ATSGS1, RECQ4A, ATRECQ4A | RECQ4A; ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding (1162 aa)
       
 
  0.605
Bra030065
AT1G27880 (E=0.0) | ATP-dependent DNA helicase, putative (972 aa)
       
 
  0.605
Bra027115
AT1G60930 (E=0.0) RECQL4B, ATRECQ4B | ATRECQ4B (ARABIDOPSIS RECQ HELICASE L4B); ATP binding / ATP-dependent helicase/ DNA helicase/ catalytic/ helicase/ nucleic acid binding / nucleotide binding (1159 aa)
       
 
  0.605
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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