STRINGSTRING
Bra001778 protein (Brassica rapa) - STRING interaction network
"Bra001778" - AT3G20170 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001778AT3G20170 (E=5e-225) | armadillo/beta-catenin repeat family protein (476 aa)    
Predicted Functional Partners:
Bra037215
AT2G14255 (E=3e-277) | zinc ion binding (546 aa)
     
  0.470
Bra020101
AT5G20350 (E=3e-152) TIP1 | TIP1 (TIP GROWTH DEFECTIVE 1); S-acyltransferase/ acyl binding (572 aa)
     
  0.470
Bra006555
AT5G20350 (E=3e-131) TIP1 | TIP1 (TIP GROWTH DEFECTIVE 1); S-acyltransferase/ acyl binding (375 aa)
     
  0.470
Bra002296
AT5G20350 (E=5e-152) TIP1 | TIP1 (TIP GROWTH DEFECTIVE 1); S-acyltransferase/ acyl binding (574 aa)
     
  0.470
Bra037564
AT3G18770 (E=1e-213) | LOCATED IN- chloroplast; EXPRESSED IN- 6 plant structures; EXPRESSED DURING- 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s- Autophagy-related protein 13 (InterPro-IPR018731); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT3G49590.2); Has 376 Blast hits to 291 proteins in 100 species- Archae - 0; Bacteria - 15; Metazoa - 70; Fungi - 108; Plants - 62; Viruses - 7; Other Eukaryotes - 114 (source- NCBI BLink). (590 aa)
       
  0.457
Bra022353
AT3G18770 (E=2e-050) | LOCATED IN- chloroplast; EXPRESSED IN- 6 plant structures; EXPRESSED DURING- 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s- Autophagy-related protein 13 (InterPro-IPR018731); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT3G49590.2); Has 376 Blast hits to 291 proteins in 100 species- Archae - 0; Bacteria - 15; Metazoa - 70; Fungi - 108; Plants - 62; Viruses - 7; Other Eukaryotes - 114 (source- NCBI BLink). (434 aa)
       
  0.457
Bra019602
AT3G49590 (E=3e-074) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- Autophagy-related protein 13 (InterPro-IPR018731); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT3G18770.1); Has 1841 Blast hits to 549 proteins in 149 species- Archae - 0; Bacteria - 58; Metazoa - 305; Fungi - 125; Plants - 73; Viruses - 5; Other Eukaryotes - 1275 (source- NCBI BLink). (563 aa)
       
  0.457
Bra017973
AT3G49590 (E=6e-032) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- Autophagy-related protein 13 (InterPro-IPR018731); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT3G18770.1); Has 1841 Blast hits to 549 proteins in 149 species- Archae - 0; Bacteria - 58; Metazoa - 305; Fungi - 125; Plants - 73; Viruses - 5; Other Eukaryotes - 1275 (source- NCBI BLink). (317 aa)
       
  0.457
Bra008427
AT1G79620 (E=2e-194) | leucine-rich repeat transmembrane protein kinase, putative (1465 aa)
     
 
  0.414
Bra000209
AT2G40860 (E=0.0) | protein kinase family protein / protein phosphatase 2C ( PP2C) family protein (655 aa)
     
 
  0.414
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (15%) [HD]