STRINGSTRING
Bra001784 protein (Brassica rapa) - STRING interaction network
"Bra001784" - AT1G50640 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001784AT1G50640 (E=1e-053) ERF3, ATERF3 | ERF3 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 3); DNA binding / protein binding / transcription factor/ transcription repressor (215 aa)    
Predicted Functional Partners:
Bra038508
AT2G22600 (E=6e-229) | KH domain-containing protein (639 aa)
           
  0.406
Bra030226
AT2G22600 (E=1e-176) | KH domain-containing protein (620 aa)
           
  0.406
Bra026852
AT1G14170 (E=5e-227) | KH domain-containing protein (485 aa)
           
  0.406
Bra025032
AT5G46190 (E=2e-232) | KH domain-containing protein (646 aa)
           
  0.406
Bra024789
AT1G14170 (E=2e-131) | KH domain-containing protein (376 aa)
           
  0.406
Bra024292
AT5G64390 (E=0.0) HEN4 | HEN4 (HUA ENHANCER 4); RNA binding / nucleic acid binding (857 aa)
           
  0.406
Bra022624
AT5G53060 (E=5e-213) | KH domain-containing protein (661 aa)
           
  0.406
Bra019674
AT1G14170 (E=7e-177) | KH domain-containing protein (409 aa)
           
  0.406
Bra019133
AT4G26000 (E=5e-182) PEP | PEP (PEPPER); RNA binding / nucleic acid binding (398 aa)
           
  0.406
Bra014290
AT1G51580 (E=4e-161) | KH domain-containing protein (581 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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