STRINGSTRING
Bra001788 protein (Brassica rapa) - STRING interaction network
"Bra001788" - AT3G20390 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001788AT3G20390 (E=2e-069) | endoribonuclease L-PSP family protein (179 aa)    
Predicted Functional Partners:
Bra038817
AT2G18770 (E=7e-116) | signal recognition particle binding (323 aa)
       
 
  0.627
Bra009124
AT5G05670 (E=1e-120) | signal recognition particle binding (257 aa)
       
 
  0.612
Bra005862
AT5G05670 (E=6e-127) | signal recognition particle binding (260 aa)
       
 
  0.612
Bra035775
AT2G41020 (E=3e-018) | WW domain-containing protein (101 aa)
       
      0.612
Bra033454
AT3G52120 (E=1e-042) | SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (131 aa)
       
      0.612
Bra025530
AT5G02790 (E=3e-049) | In2-1 protein, putative (167 aa)
       
      0.612
Bra016955
AT2G41020 (E=1e-190) | WW domain-containing protein (799 aa)
       
      0.612
Bra006900
AT3G52120 (E=3e-178) | SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (445 aa)
       
      0.612
Bra026344
AT4G27490 (E=4e-127) | 3’ exoribonuclease family domain 1-containing protein (257 aa)
       
    0.601
Bra018218
AT3G46210 (E=8e-060) | 3’ exoribonuclease family domain 1-containing protein (262 aa)
       
    0.601
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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