STRINGSTRING
Bra001792 protein (Brassica rapa) - STRING interaction network
"Bra001792" - AT3G20550 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001792AT3G20550 (E=2e-091) DDL | DDL (DAWDLE) (317 aa)    
Predicted Functional Partners:
Bra018163
AT3G47120 (E=2e-091) | RNA recognition motif (RRM)-containing protein (293 aa)
     
 
  0.981
Bra033293
AT1G01040 (E=0.0) DCL1, CAF, SUS1, SIN1, ASU1, EMB76, EMB60, ATDCL1 | DCL1 (DICER-LIKE 1); ATP-dependent helicase/ double-stranded RNA binding / protein binding / ribonuclease III (1846 aa)
     
 
  0.954
Bra033870
AT1G31870 (E=5e-197) | unknown protein (548 aa)
     
 
  0.950
Bra015687
AT1G77180 (E=2e-227) | chromatin protein family (610 aa)
     
 
  0.946
Bra008295
AT1G77180 (E=9e-102) | chromatin protein family (488 aa)
     
 
  0.946
Bra021188
AT4G15900 (E=8e-197) PRL1 | PRL1 (PLEIOTROPIC REGULATORY LOCUS 1); basal transcription repressor/ nucleotide binding / protein binding (497 aa)
     
 
  0.941
Bra012753
AT4G15900 (E=2e-264) PRL1 | PRL1 (PLEIOTROPIC REGULATORY LOCUS 1); basal transcription repressor/ nucleotide binding / protein binding (481 aa)
     
 
  0.941
Bra007287
AT4G15900 (E=4e-151) PRL1 | PRL1 (PLEIOTROPIC REGULATORY LOCUS 1); basal transcription repressor/ nucleotide binding / protein binding (400 aa)
     
 
  0.941
Bra000788
AT4G04320 (E=5e-183) | malonyl-CoA decarboxylase family protein (934 aa)
     
 
  0.941
Bra031999
AT3G03300 (E=0.0) DCL2, ATDCL2 | DCL2 (DICER-LIKE 2); ATP binding / ATP-dependent helicase/ RNA binding / double-stranded RNA binding / helicase/ nucleic acid binding / ribonuclease III (1277 aa)
     
 
  0.927
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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