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Bra001793 protein (Brassica rapa) - STRING interaction network
"Bra001793" - AT3G20560 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001793AT3G20560 (E=4e-249) ATPDIL5-3, PDI12, ATPDI12 | ATPDIL5-3 (PDI-LIKE 5-3); protein disulfide isomerase (484 aa)    
Predicted Functional Partners:
Bra029520
AT4G04860 (E=2e-127) DER2.2 | DER2.2 (DERLIN-2.2) ; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins (244 aa)
     
      0.521
Bra020870
AT4G21810 (E=9e-127) DER2.1 | DER2.1 (DERLIN-2.1) ; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins (244 aa)
     
      0.521
Bra013563
AT4G21810 (E=5e-110) DER2.1 | DER2.1 (DERLIN-2.1) ; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins (284 aa)
     
      0.521
Bra011097
AT4G29330 (E=4e-109) DER1 | DER1 (DERLIN-1) ; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins (262 aa)
     
      0.521
Bra016074
AT1G72280 (E=6e-246) AERO1 | AERO1 (Arabidopsis endoplasmic reticulum oxidoreductins 1); FAD binding / electron carrier/ oxidoreductase, acting on sulfur group of donors, disulfide as acceptor / protein binding (471 aa)
       
 
  0.515
Bra005067
AT2G38960 (E=2e-212) AERO2 | AERO2 (Arabidopsis endoplasmic reticulum oxidoreductins 2); FAD binding / electron carrier/ oxidoreductase, acting on sulfur group of donors, disulfide as acceptor / protein binding (448 aa)
       
 
  0.515
Bra032410
AT1G30630 (E=1e-147) | coatomer protein epsilon subunit family protein / COPE family protein (293 aa)
     
      0.507
Bra022994
AT2G34840 (E=3e-152) | coatomer protein epsilon subunit family protein / COPE family protein (293 aa)
     
      0.507
Bra021935
AT2G34840 (E=3e-150) | coatomer protein epsilon subunit family protein / COPE family protein (293 aa)
     
      0.507
Bra018502
AT4G04610 (E=3e-030) APR1, APR, PRH19, ATAPR1 | APR1 (APS REDUCTASE 1); adenylyl-sulfate reductase (172 aa)
     
 
  0.476
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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