STRINGSTRING
Bra001795 protein (Brassica rapa) - STRING interaction network
"Bra001795" - AT3G20580 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001795AT3G20580 (E=0.0) COBL10 | COBL10 (COBRA-LIKE PROTEIN 10 PRECURSOR) (668 aa)    
Predicted Functional Partners:
Bra022416
AT3G19370 (E=2e-291) | LOCATED IN- plasma membrane; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Protein of unknown function DUF869, plant (InterPro-IPR008587); BEST Arabidopsis thaliana protein match is- transport protein-related (TAIR-AT2G23360.1); Has 35914 Blast hits to 20425 proteins in 933 species- Archae - 357; Bacteria - 2527; Metazoa - 19254; Fungi - 2459; Plants - 1272; Viruses - 95; Other Eukaryotes - 9950 (source- NCBI BLink). (700 aa)
           
  0.471
Bra022414
AT3G19370 (E=3e-185) | LOCATED IN- plasma membrane; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Protein of unknown function DUF869, plant (InterPro-IPR008587); BEST Arabidopsis thaliana protein match is- transport protein-related (TAIR-AT2G23360.1); Has 35914 Blast hits to 20425 proteins in 933 species- Archae - 357; Bacteria - 2527; Metazoa - 19254; Fungi - 2459; Plants - 1272; Viruses - 95; Other Eukaryotes - 9950 (source- NCBI BLink). (668 aa)
           
  0.471
Bra009589
AT3G45100 (E=2e-218) SETH2 | SETH2; transferase, transferring glycosyl groups (429 aa)
           
  0.406
Bra005376
AT2G34980 (E=4e-112) SETH1 | SETH1; phosphatidylinositol N-acetylglucosaminyltransferase/ transferase (312 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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