STRINGSTRING
Bra001796 protein (Brassica rapa) - STRING interaction network
"Bra001796" - AT3G20600 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001796AT3G20600 (E=2e-091) NDR1 | NDR1 (non race-specific disease resistance 1); signal transducer (211 aa)    
Predicted Functional Partners:
Bra013233
AT3G25070 (E=1e-079) RIN4 | RIN4 (RPM1 INTERACTING PROTEIN 4); protein binding (208 aa)
       
 
  0.688
Bra033431
AT3G52430 (E=3e-162) PAD4, ATPAD4 | PAD4 (PHYTOALEXIN DEFICIENT 4); lipase/ protein binding / triacylglycerol lipase (430 aa)
           
  0.549
Bra012805
AT3G52430 (E=4e-189) PAD4, ATPAD4 | PAD4 (PHYTOALEXIN DEFICIENT 4); lipase/ protein binding / triacylglycerol lipase (630 aa)
           
  0.549
Bra006922
AT3G52430 (E=8e-195) PAD4, ATPAD4 | PAD4 (PHYTOALEXIN DEFICIENT 4); lipase/ protein binding / triacylglycerol lipase (547 aa)
           
  0.549
Bra028270
AT5G51700 (E=1e-108) PBS2, ATRAR1, RPR2, RAR1 | PBS2 (PPHB SUSCEPTIBLE 2); protein binding / zinc ion binding (230 aa)
           
  0.542
Bra022561
AT5G51700 (E=5e-116) PBS2, ATRAR1, RPR2, RAR1 | PBS2 (PPHB SUSCEPTIBLE 2); protein binding / zinc ion binding (227 aa)
           
  0.542
Bra033775
AT3G48090 (E=3e-194) EDS1 | EDS1 (enhanced disease susceptibility 1); lipase/ signal transducer/ triacylglycerol lipase (600 aa)
           
  0.495
Bra033774
AT3G48080 (E=1e-185) | lipase class 3 family protein / disease resistance protein-related (592 aa)
           
  0.495
Bra018085
AT3G48080 (E=1e-188) | lipase class 3 family protein / disease resistance protein-related (600 aa)
           
  0.495
Bra011880
AT4G39030 (E=6e-259) EDS5, SID1 | EDS5 (ENHANCED DISEASE SUSCEPTIBILITY 5); antiporter/ multidrug efflux pump/ transporter (538 aa)
           
  0.448
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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