STRINGSTRING
Bra001809 protein (Brassica rapa) - STRING interaction network
"Bra001809" - AT3G21055 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001809AT3G21055 (E=1e-037) PSBTN | PSBTN (photosystem II subunit T) (106 aa)    
Predicted Functional Partners:
Bra023176
AT1G31330 (E=2e-100) PSAF | PSAF (photosystem I subunit F) (220 aa)
     
   
  0.682
Bra038418
AT1G31330 (E=6e-090) PSAF | PSAF (photosystem I subunit F) (213 aa)
     
   
  0.680
Bra014908
AT1G31330 (E=3e-103) PSAF | PSAF (photosystem I subunit F) (217 aa)
     
   
  0.680
Bra035535
AT2G06520 (E=4e-018) PSBX | PSBX (photosystem II subunit X) (126 aa)
     
   
  0.584
Bra035533
AT2G06520 (E=3e-017) PSBX | PSBX (photosystem II subunit X) (145 aa)
     
   
  0.584
Bra032384
AT1G30380 (E=1e-055) PSAK | PSAK (photosystem I subunit K) (131 aa)
     
        0.569
Bra010774
AT1G30380 (E=2e-057) PSAK | PSAK (photosystem I subunit K) (130 aa)
     
        0.569
Bra037104
AT1G55670 (E=6e-060) PSAG | PSAG (PHOTOSYSTEM I SUBUNIT G) (161 aa)
     
   
  0.551
Bra030843
AT1G55670 (E=2e-065) PSAG | PSAG (PHOTOSYSTEM I SUBUNIT G) (161 aa)
     
   
  0.550
Bra038011
AT1G55670 (E=5e-055) PSAG | PSAG (PHOTOSYSTEM I SUBUNIT G) (161 aa)
     
        0.550
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (6%) [HD]