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Bra001816 protein (Brassica rapa) - STRING interaction network
"Bra001816" - AT3G21160 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001816AT3G21160 (E=2e-285) | mannosyl-oligosaccharide 1,2-alpha-mannosidase, putative (571 aa)    
Predicted Functional Partners:
Bra033557
AT2G17290 (E=3e-250) CPK6, ATCDPK3 | CPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6); ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase/ protein serine/threonine kinase (895 aa)
     
  0.760
Bra014690
AT4G01400 (E=9e-113) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- COG4 transport (InterPro-IPR013167), Pentatricopeptide repeat (InterPro-IPR002885); BEST Arabidopsis thaliana protein match is- pentatricopeptide (PPR) repeat-containing protein (TAIR-AT5G46100.1); Has 11639 Blast hits to 3936 proteins in 180 species- Archae - 0; Bacteria - 2; Metazoa - 206; Fungi - 141; Plants - 11004; Viruses - 0; Other Eukary [...] (276 aa)
     
    0.701
Bra000928
AT4G01400 (E=0.0) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- COG4 transport (InterPro-IPR013167), Pentatricopeptide repeat (InterPro-IPR002885); BEST Arabidopsis thaliana protein match is- pentatricopeptide (PPR) repeat-containing protein (TAIR-AT5G46100.1); Has 11639 Blast hits to 3936 proteins in 180 species- Archae - 0; Bacteria - 2; Metazoa - 206; Fungi - 141; Plants - 11004; Viruses - 0; Other Eukaryote [...] (751 aa)
     
    0.701
Bra024240
AT5G63840 (E=0.0) RSW3 | RSW3 (RADIAL SWELLING 3); glucosidase/ hydrolase, hydrolyzing O-glycosyl compounds (921 aa)
     
 
  0.628
Bra032351
AT1G30000 (E=7e-297) | glycoside hydrolase family 47 protein (617 aa)
     
 
0.623
Bra010804
AT1G30000 (E=3e-303) | glycoside hydrolase family 47 protein (606 aa)
     
 
0.622
Bra037754
AT5G63840 (E=0.0) RSW3 | RSW3 (RADIAL SWELLING 3); glucosidase/ hydrolase, hydrolyzing O-glycosyl compounds (841 aa)
     
 
  0.561
Bra028332
AT3G23640 (E=0.0) HGL1 | HGL1 (heteroglycan glucosidase 1); hydrolase, hydrolyzing O-glycosyl compounds (989 aa)
     
 
  0.561
Bra028330
AT3G23640 (E=1e-212) HGL1 | HGL1 (heteroglycan glucosidase 1); hydrolase, hydrolyzing O-glycosyl compounds (898 aa)
     
 
  0.561
Bra036771
AT1G36160 (E=0.0) ACC1, AT-ACC1, EMB22, GK, PAS3 | ACC1 (ACETYL-COENZYME A CARBOXYLASE 1); acetyl-CoA carboxylase (2233 aa)
           
  0.518
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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