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Bra001817 protein (Brassica rapa) - STRING interaction network
"Bra001817" - AT3G21220 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001817AT3G21220 (E=2e-135) ATMKK5, ATMAP2K_ALPHA, MAP2K_A, MKK5, ATMEK5, MEK5 | ATMKK5 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5); MAP kinase kinase/ kinase (379 aa)    
Predicted Functional Partners:
Bra040822
AT2G20050 (E=0.0) | ATP binding / cAMP-dependent protein kinase regulator/ catalytic/ protein kinase/ protein serine/threonine phosphatase (966 aa)
       
0.948
Bra006205
AT5G13530 (E=0.0) KEG | KEG (KEEP ON GOING); protein binding / protein kinase/ ubiquitin-protein ligase (1608 aa)
       
  0.940
Bra016108
AT1G71860 (E=3e-142) PTP1, ATPTP1 | PTP1 (PROTEIN TYROSINE PHOSPHATASE 1); protein tyrosine phosphatase (343 aa)
       
  0.937
Bra000209
AT2G40860 (E=0.0) | protein kinase family protein / protein phosphatase 2C ( PP2C) family protein (655 aa)
       
0.906
Bra036394
AT4G01370 (E=8e-034) ATMPK4, MPK4 | ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4); MAP kinase/ kinase (116 aa)
     
  0.904
Bra029283
AT5G19010 (E=4e-029) MPK16 | MPK16; MAP kinase (141 aa)
     
  0.904
Bra017970
AT5G19010 (E=3e-028) MPK16 | MPK16; MAP kinase (156 aa)
     
  0.904
Bra016567
AT1G18150 (E=5e-042) ATMPK8 | ATMPK8; MAP kinase (135 aa)
     
  0.904
Bra002452
AT1G18150 (E=3e-016) ATMPK8 | ATMPK8; MAP kinase (96 aa)
     
  0.904
Bra000327
AT1G43080 (E=2e-163) | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (474 aa)
     
  0.904
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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