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Bra001825 protein (Brassica rapa) - STRING interaction network
"Bra001825" - AT3G21320 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001825AT3G21320 (E=1e-169) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; BEST Arabidopsis thaliana protein match is- ELF3 (EARLY FLOWERING 3); protein C-terminus binding / transcription factor (TAIR-AT2G25930.1); Has 39 Blast hits to 37 proteins in 14 species- Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 2 (source- NCBI BLink). (522 aa)    
Predicted Functional Partners:
Bra031672
AT1G09570 (E=0.0) PHYA, FHY2, FRE1, HY8 | PHYA (PHYTOCHROME A); G-protein coupled photoreceptor/ protein histidine kinase/ red or far-red light photoreceptor/ signal transducer ; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light- the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region (1121 aa)
       
  0.846
Bra020013
AT1G09570 (E=0.0) PHYA, FHY2, FRE1, HY8 | PHYA (PHYTOCHROME A); G-protein coupled photoreceptor/ protein histidine kinase/ red or far-red light photoreceptor/ signal transducer (1210 aa)
       
  0.846
Bra013286
AT4G18130 (E=0.0) PHYE | PHYE (PHYTOCHROME DEFECTIVE E); G-protein coupled photoreceptor/ protein histidine kinase/ signal transducer ; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light- the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region (1114 aa)
       
  0.846
Bra039947
AT3G22380 (E=0.0) TIC | TIC (TIME FOR COFFEE) (1561 aa)
       
 
  0.595
Bra023830
AT3G22380 (E=0.0) TIC | TIC (TIME FOR COFFEE) (1525 aa)
       
 
  0.595
Bra029750
AT3G09150 (E=1e-146) HY2, GUN3 | HY2 (ELONGATED HYPOCOTYL 2); phytochromobilin-ferredoxin oxidoreductase (326 aa)
       
      0.591
Bra001325
AT3G09150 (E=1e-157) HY2, GUN3 | HY2 (ELONGATED HYPOCOTYL 2); phytochromobilin-ferredoxin oxidoreductase (323 aa)
       
      0.591
Bra018540
AT4G02560 (E=0.0) LD | LD (luminidependens); transcription factor (813 aa)
       
      0.475
Bra024536
AT1G22770 (E=0.0) GI, FB | GI (GIGANTEA) (1171 aa)
       
  0.469
Bra005541
AT2G32950 (E=0.0) COP1, ATCOP1, DET340, FUS1, EMB168 | COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1); protein binding / ubiquitin-protein ligase (669 aa)
       
  0.461
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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