STRINGSTRING
Bra001834 protein (Brassica rapa) - STRING interaction network
"Bra001834" - AT3G21580 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001834AT3G21580 (E=3e-186) | cobalt ion transmembrane transporter (384 aa)    
Predicted Functional Partners:
Bra011442
AT4G33460 (E=8e-115) ATNAP13, EMB2751 | ATNAP13; transporter (273 aa)
 
  0.978
Bra008779
AT5G14100 (E=2e-131) ATNAP14, NAP14 | ATNAP14; transporter (274 aa)
   
  0.971
Bra025641
AT1G02520 (E=1e-034) PGP11 | PGP11 (P-GLYCOPROTEIN 11); ATPase, coupled to transmembrane movement of substances (208 aa)
       
  0.571
Bra040978
ATCG00740 (E=1e-124) RPOA | RNA polymerase alpha subunit (475 aa)
              0.557
Bra040980
ATCG00780 (E=1e-038) RPL14 | encodes a chloroplast ribosomal protein L14, a constituent of the large subunit of the ribosomal complex (171 aa)
         
  0.546
Bra015131
AT2G04040 (E=8e-223) ATDTX1, TX1 | TX1; antiporter/ multidrug efflux pump/ multidrug transporter/ transporter (761 aa)
         
  0.539
Bra018153
AT3G47390 (E=5e-292) | cytidine/deoxycytidylate deaminase family protein (587 aa)
           
  0.482
Bra038815
AT2G18710 (E=8e-243) SCY1 | SCY1 (SecY Homolog 1); P-P-bond-hydrolysis-driven protein transmembrane transporter (551 aa)
         
  0.475
Bra032303
AT1G29310 (E=1e-267) | P-P-bond-hydrolysis-driven protein transmembrane transporter (475 aa)
         
  0.475
Bra005441
AT2G34250 (E=1e-270) | protein transport protein sec61, putative (475 aa)
         
  0.475
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (10%) [HD]