STRINGSTRING
Bra001836 protein (Brassica rapa) - STRING interaction network
"Bra001836" - AT3G21610 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001836AT3G21610 (E=1e-065) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- Acid phosphatase/vanadium-dependent haloperoxidase related (InterPro-IPR003832); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G67600.1); Has 626 Blast hits to 626 proteins in 204 species- Archae - 0; Bacteria - 365; Metazoa - 0; Fungi - 0; Plants - 103; Viruses - 0; Other Eukaryotes - 158 (source- NCBI BLink). (172 aa)    
Predicted Functional Partners:
Bra037947
AT5G49940 (E=1e-085) NFU2, ATCNFU2 | NFU2 (NIFU-LIKE PROTEIN 2); structural molecule (249 aa)
         
  0.443
Bra031245
AT3G20970 (E=2e-110) NFU4, ATNFU2 | NFU4; structural molecule (280 aa)
         
  0.443
Bra018906
AT1G51390 (E=4e-104) NFU5, ATNFU1 | NFU5; ATP binding / structural molecule (275 aa)
         
  0.443
Bra013933
AT4G25910 (E=6e-102) NFU3, ATCNFU3 | NFU3; structural molecule (238 aa)
         
  0.443
Bra000905
AT4G01940 (E=6e-074) NFU1, AtCNFU1 | NFU1; structural molecule (230 aa)
         
  0.443
Bra000601
AT5G49940 (E=4e-083) NFU2, ATCNFU2 | NFU2 (NIFU-LIKE PROTEIN 2); structural molecule (226 aa)
         
  0.443
Bra039216
AT2G23800 (E=8e-157) GGPS2, GGPS5 | GGPS2 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 2); farnesyltranstransferase (341 aa)
              0.437
Bra038544
AT2G18640 (E=5e-147) GGPS4 | GGPS4 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 4); farnesyltranstransferase (367 aa)
              0.437
Bra037350
AT4G00620 (E=2e-153) | tetrahydrofolate dehydrogenase/cyclohydrolase, putative (350 aa)
              0.437
Bra035808
AT3G20160 (E=2e-139) | geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative (350 aa)
              0.437
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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