STRINGSTRING
Bra001843 protein (Brassica rapa) - STRING interaction network
"Bra001843" - AT3G21720 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001843AT3G21720 (E=1e-278) ICL | ICL (ISOCITRATE LYASE); catalytic/ isocitrate lyase (538 aa)    
Predicted Functional Partners:
Bra028813
AT5G03860 (E=2e-314) MLS | MLS (MALATE SYNTHASE); malate synthase (561 aa)
 
 
  0.999
Bra033118
AT5G03860 (E=2e-034) MLS | MLS (MALATE SYNTHASE); malate synthase (102 aa)
 
 
  0.996
Bra004275
AT1G68010 (E=9e-208) HPR | HPR; glycerate dehydrogenase/ poly(U) binding (386 aa)
         
  0.933
Bra004055
AT1G68010 (E=5e-209) HPR | HPR; glycerate dehydrogenase/ poly(U) binding (386 aa)
         
  0.933
Bra019845
AT2G05710 (E=0.0) | aconitate hydratase, cytoplasmic, putative / citrate hydro-lyase/aconitase, putative ; Catalyzes the isomerization of citrate to isocitrate via cis-aconitate (991 aa)
       
  0.917
Bra011642
AT4G35830 (E=0.0) | aconitate hydratase, cytoplasmic / citrate hydro-lyase / aconitase (ACO) ; Catalyzes the isomerization of citrate to isocitrate via cis-aconitate (898 aa)
       
  0.917
Bra010508
AT4G35830 (E=0.0) | aconitate hydratase, cytoplasmic / citrate hydro-lyase / aconitase (ACO) ; Catalyzes the isomerization of citrate to isocitrate via cis-aconitate (898 aa)
       
  0.917
Bra037207
AT2G13360 (E=1e-217) AGT, AGT1 | AGT (ALANINE-GLYOXYLATE AMINOTRANSFERASE); alanine-glyoxylate transaminase/ serine-glyoxylate transaminase/ serine-pyruvate transaminase (401 aa)
   
 
  0.911
Bra013148
AT2G13360 (E=3e-217) AGT, AGT1 | AGT (ALANINE-GLYOXYLATE AMINOTRANSFERASE); alanine-glyoxylate transaminase/ serine-glyoxylate transaminase/ serine-pyruvate transaminase (401 aa)
   
 
  0.911
Bra035206
AT1G79870 (E=1e-148) | oxidoreductase family protein (310 aa)
         
  0.904
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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