STRINGSTRING
Bra001848 protein (Brassica rapa) - STRING interaction network
"Bra001848" - AT3G21865 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001848AT3G21865 (E=2e-117) PEX22 | PEX22 (peroxin 22); protein binding (282 aa)    
Predicted Functional Partners:
Bra009857
AT5G25760 (E=3e-087) PEX4, UBC21 | PEX4 (PEROXIN4); protein binding / ubiquitin-protein ligase (163 aa)
     
 
  0.809
Bra036549
AT5G25760 (E=2e-085) PEX4, UBC21 | PEX4 (PEROXIN4); protein binding / ubiquitin-protein ligase (190 aa)
     
 
  0.771
Bra032565
AT1G03000 (E=0.0) PEX6 | PEX6 (PEROXIN 6); ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding (1864 aa)
           
  0.552
Bra028938
AT5G56290 (E=0.0) PEX5, ATPEX5 | PEX5 (PEROXIN 5); peroxisome matrix targeting signal-1 binding / protein binding (730 aa)
           
  0.545
Bra040195
AT3G04460 (E=5e-095) PEX12, ATPEX12, APM4 | PEX12; protein binding / zinc ion binding ; Required for peroxisome biogenesis and for PTS1- and PTS2-dependent protein import into peroxisomes (381 aa)
           
  0.543
Bra032295
AT1G29260 (E=2e-185) PEX7, ATPEX7 | PEX7; peroxisome matrix targeting signal-2 binding / protein binding (317 aa)
           
  0.541
Bra001257
AT3G07560 (E=9e-035) APM2, PEX13 | PEX13 (PEROXIN 13); protein binding (304 aa)
           
  0.541
Bra010124
AT5G62810 (E=8e-163) PEX14, ATPEX14, PED2 | PEX14; protein binding / protein transporter (531 aa)
           
  0.526
Bra010844
AT1G29260 (E=5e-185) PEX7, ATPEX7 | PEX7; peroxisome matrix targeting signal-2 binding / protein binding (317 aa)
           
  0.511
Bra029657
AT3G07560 (E=7e-037) APM2, PEX13 | PEX13 (PEROXIN 13); protein binding (289 aa)
           
  0.510
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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