STRINGSTRING
Bra001849 protein (Brassica rapa) - STRING interaction network
"Bra001849" - AT3G21970 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001849AT3G21970 (E=2e-068) | receptor-like protein kinase-related (265 aa)    
Predicted Functional Partners:
Bra001097
AT3G04150 (E=2e-104) | germin-like protein, putative (233 aa)
           
  0.607
Bra034606
AT4G05230 (E=7e-079) | ubiquitin family protein (208 aa)
           
  0.606
Bra029569
AT4G05230 (E=8e-081) | ubiquitin family protein (206 aa)
           
  0.606
Bra035911
AT5G61930 (E=2e-175) APO3 | APO3 (ACCUMULATION OF PHOTOSYSTEM ONE 3) (399 aa)
           
  0.546
Bra016018
AT1G73100 (E=1e-288) SUVH3, SDG19 | SUVH3 (SU(VAR)3-9 HOMOLOG 3); histone methyltransferase (677 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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