STRINGSTRING
Bra001854 protein (Brassica rapa) - STRING interaction network
"Bra001854" - AT2G42010 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001854AT2G42010 (E=3e-197) PLDBETA1, PLDBETA | PLDBETA1 (PHOSPHOLIPASE D BETA 1); phospholipase D (1534 aa)    
Predicted Functional Partners:
Bra040822
AT2G20050 (E=0.0) | ATP binding / cAMP-dependent protein kinase regulator/ catalytic/ protein kinase/ protein serine/threonine phosphatase (966 aa)
     
  0.921
Bra022288
AT3G18165 (E=1e-134) MOS4 | MOS4 (Modifier of snc1,4) (253 aa)
       
      0.902
Bra021297
AT3G18165 (E=4e-136) MOS4 | MOS4 (Modifier of snc1,4) (253 aa)
       
      0.902
Bra006205
AT5G13530 (E=0.0) KEG | KEG (KEEP ON GOING); protein binding / protein kinase/ ubiquitin-protein ligase (1608 aa)
     
  0.887
Bra039647
AT1G50030 (E=0.0) TOR | TOR (TARGET OF RAPAMYCIN); 1-phosphatidylinositol-3-kinase/ protein binding (2452 aa)
     
 
  0.869
Bra018828
AT1G50030 (E=0.0) TOR | TOR (TARGET OF RAPAMYCIN); 1-phosphatidylinositol-3-kinase/ protein binding (2435 aa)
     
 
  0.869
Bra015251
AT5G40820 (E=8e-032) ATRAD3, ATR, ATATR | ATRAD3; binding / inositol or phosphatidylinositol kinase/ phosphotransferase, alcohol group as acceptor / protein serine/threonine kinase (3604 aa)
     
 
  0.869
Bra014234
AT1G50030 (E=1e-026) TOR | TOR (TARGET OF RAPAMYCIN); 1-phosphatidylinositol-3-kinase/ protein binding (79 aa)
     
 
  0.869
Bra040057
AT3G08730 (E=3e-230) ATPK1, ATPK6, ATS6K1, PK6, PK1, S6K1 | PK1 (PROTEIN-SERINE KINASE 1); kinase/ protein binding / protein kinase/ protein serine/threonine kinase (460 aa)
     
  0.865
Bra040056
AT3G08730 (E=7e-118) ATPK1, ATPK6, ATS6K1, PK6, PK1, S6K1 | PK1 (PROTEIN-SERINE KINASE 1); kinase/ protein binding / protein kinase/ protein serine/threonine kinase (407 aa)
     
  0.865
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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