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Bra001857 protein (Brassica rapa) - STRING interaction network
"Bra001857" - AT4G15000 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001857AT4G15000 (E=2e-060) | 60S ribosomal protein L27 (RPL27C) (135 aa)    
Predicted Functional Partners:
Bra040980
ATCG00780 (E=1e-038) RPL14 | encodes a chloroplast ribosomal protein L14, a constituent of the large subunit of the ribosomal complex (171 aa)
   
  0.999
Bra003512
AT2G47610 (E=2e-108) | 60S ribosomal protein L7A (RPL7aA) (405 aa)
     
  0.999
Bra024577
AT1G23290 (E=6e-029) RPL27A, RPL27AB | RPL27AB; structural constituent of ribosome (117 aa)
   
  0.999
Bra016354
AT1G23290 (E=3e-074) RPL27A, RPL27AB | RPL27AB; structural constituent of ribosome (147 aa)
   
  0.999
Bra012370
AT1G23290 (E=5e-080) RPL27A, RPL27AB | RPL27AB; structural constituent of ribosome (156 aa)
   
  0.999
Bra007929
AT1G70600 (E=5e-081) | structural constituent of ribosome (146 aa)
   
  0.999
Bra003951
AT1G70600 (E=1e-083) | structural constituent of ribosome (146 aa)
   
  0.999
Bra020572
AT4G14960 (E=4e-115) TUA6 | TUA6; structural constituent of cytoskeleton ; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain (468 aa)
   
  0.999
Bra012580
AT4G18730 (E=2e-093) RPL16B | RPL16B; structural constituent of ribosome (182 aa)
   
  0.999
Bra021990
AT4G18730 (E=7e-093) RPL16B | RPL16B; structural constituent of ribosome (182 aa)
   
  0.999
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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