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Bra001863 protein (Brassica rapa) - STRING interaction network
"Bra001863" - AT3G22300 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001863AT3G22300 (E=2e-056) RPS10 | RPS10 (RIBOSOMAL PROTEIN S10); structural constituent of ribosome (223 aa)    
Predicted Functional Partners:
Bra039370
AT3G13120 (E=1e-059) | 30S ribosomal protein S10, chloroplast, putative (205 aa)
     
 
    0.896
Bra034704
AT3G13120 (E=2e-074) | 30S ribosomal protein S10, chloroplast, putative (192 aa)
     
 
    0.896
Bra001489
AT3G13120 (E=7e-072) | 30S ribosomal protein S10, chloroplast, putative (190 aa)
     
 
    0.597
Bra035637
AT5G56940 (E=3e-066) | ribosomal protein S16 family protein (136 aa)
     
   
  0.486
Bra002779
AT5G56940 (E=2e-065) | ribosomal protein S16 family protein (131 aa)
     
   
  0.486
Bra025534
AT5G40950 (E=4e-103) RPL27 | RPL27 (RIBOSOMAL PROTEIN LARGE SUBUNIT 27); structural constituent of ribosome (198 aa)
           
  0.480
Bra010078
AT3G47370 (E=1e-062) | 40S ribosomal protein S20 (RPS20B) (122 aa)
     
 
    0.415
Bra010078.1-P
AT3G47370 (E=1e-062) | 40S ribosomal protein S20 (RPS20B) (122 aa)
     
 
    0.415
Bra002900
AT5G55510 (E=5e-081) | P-P-bond-hydrolysis-driven protein transmembrane transporter/ protein transporter (213 aa)
           
  0.410
Bra032980
AT3G27080 (E=2e-071) TOM20-3 | TOM20-3 (TRANSLOCASE OF OUTER MEMBRANE 20 KDA SUBUNIT 3); P-P-bond-hydrolysis-driven protein transmembrane transporter (199 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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