STRINGSTRING
Bra001868 protein (Brassica rapa) - STRING interaction network
"Bra001868" - AT3G22480 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001868AT3G22480 (E=4e-057) PDF2 | prefoldin-related KE2 family protein (144 aa)    
Predicted Functional Partners:
Bra030185
AT1G30790 (E=3e-101) | F-box family protein (589 aa)
     
  0.987
Bra030740
AT1G08780 (E=3e-048) AIP3, PDF4 | AIP3 (ABI3-INTERACTING PROTEIN 3); unfolded protein binding ; Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins (131 aa)
     
  0.980
Bra018601
AT1G08780 (E=2e-060) AIP3, PDF4 | AIP3 (ABI3-INTERACTING PROTEIN 3); unfolded protein binding ; Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins (129 aa)
     
  0.980
Bra026505
AT5G23290 (E=2e-069) PDF5 | PDF5 (PREFOLDIN 5); unfolded protein binding (154 aa)
     
  0.979
Bra009668
AT5G23290 (E=2e-072) PDF5 | PDF5 (PREFOLDIN 5); unfolded protein binding (151 aa)
     
  0.979
Bra036139
AT5G49510 (E=1e-094) PDF3 | PDF3 (PREFOLDIN 3); unfolded protein binding ; Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins (196 aa)
     
  0.978
Bra010033
AT5G49510 (E=4e-093) PDF3 | PDF3 (PREFOLDIN 3); unfolded protein binding ; Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins (195 aa)
     
  0.978
Bra029161
AT2G07340 (E=6e-050) | prefoldin-related KE2 family protein (112 aa)
     
 
  0.946
Bra020572
AT4G14960 (E=4e-115) TUA6 | TUA6; structural constituent of cytoskeleton ; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain (468 aa)
     
  0.657
Bra039648
AT1G04820 (E=5e-243) TUA4 | TUA4; structural constituent of cytoskeleton ; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain (450 aa)
       
  0.643
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (7%) [HD]