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Bra001877 protein (Brassica rapa) - STRING interaction network
"Bra001877" - AT3G22660 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001877AT3G22660 (E=5e-120) | rRNA processing protein-related (286 aa)    
Predicted Functional Partners:
Bra027242
AT3G15470 (E=8e-259) | WD-40 repeat family protein (1054 aa)
     
 
  0.998
Bra021111
AT1G52930 (E=2e-141) | brix domain-containing protein (321 aa)
     
 
  0.998
Bra001595
AT3G15460 (E=7e-155) | brix domain-containing protein (316 aa)
     
 
  0.998
Bra028325
AT3G23620 (E=5e-130) | brix domain-containing protein (316 aa)
     
 
  0.998
Bra014967
AT3G23620 (E=5e-129) | brix domain-containing protein (315 aa)
     
 
  0.998
Bra034662
AT4G34910 (E=4e-232) | DEAD/DEAH box helicase, putative (RH16) (598 aa)
     
 
  0.998
Bra029214
AT4G34910 (E=6e-022) | DEAD/DEAH box helicase, putative (RH16) (84 aa)
     
 
  0.998
Bra011571
AT4G34910 (E=5e-231) | DEAD/DEAH box helicase, putative (RH16) (624 aa)
     
 
  0.998
Bra040357
AT3G07050 (E=1e-165) | GTP-binding family protein (615 aa)
     
 
  0.998
Bra029617
AT3G07050 (E=4e-230) | GTP-binding family protein (594 aa)
     
 
  0.998
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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