STRINGSTRING
Bra001882 protein (Brassica rapa) - STRING interaction network
"Bra001882" - AT3G22680 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001882AT3G22680 (E=6e-068) | unknown protein (161 aa)    
Predicted Functional Partners:
Bra019588
AT3G49250 (E=6e-146) DMS3 | DMS3 (DEFECTIVE IN MERISTEM SILENCING 3) (385 aa)
       
 
  0.846
Bra017998
AT3G49250 (E=1e-159) DMS3 | DMS3 (DEFECTIVE IN MERISTEM SILENCING 3) (432 aa)
       
 
  0.829
AGO4
AT2G27040 (E=0.0) AGO4, OCP11 | AGO4 (ARGONAUTE 4); nucleic acid binding (922 aa)
       
 
  0.667
Bra008749
AT5G14620 (E=3e-231) DRM2, DMT7 | DRM2 (DOMAINS REARRANGED METHYLTRANSFERASE 2); N-methyltransferase (601 aa)
       
 
  0.666
Bra013077
AT2G16390 (E=0.0) DRD1, CHR35, DMS1 | DRD1 (DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1); ATP binding / DNA binding / helicase/ nucleic acid binding (1459 aa)
       
 
  0.666
Bra000162
AT2G40030 (E=0.0) NRPD1B, DRD3, ATNRPD1B, DMS5, NRPE1 | NRPD1B; DNA binding / DNA-directed RNA polymerase ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (2059 aa)
       
 
  0.577
Bra009470
AT5G04290 (E=0.0) KTF1 | KTF1 (KOW DOMAIN-CONTAINING TRANSCRIPTION FACTOR 1); nucleotide binding (1543 aa)
           
  0.573
Bra022918
AT2G32940 (E=0.0) AGO6 | AGO6 (ARGONAUTE 6); nucleic acid binding (867 aa)
       
 
  0.543
Bra027611
AT1G63020 (E=0.0) NRPD1A, POL IVA, SDE4, NRPD1, SMD2 | NRPD1A (NUCLEAR RNA POLYMERASE D 1A); DNA binding / DNA-directed RNA polymerase ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1443 aa)
       
 
  0.541
Bra021058
AT3G42670 (E=0.0) CHR38, CLSY | CHR38 (CHROMATIN REMODELING 38); ATP binding / DNA binding / helicase/ nucleic acid binding (1271 aa)
       
 
  0.534
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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