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Bra001888 protein (Brassica rapa) - STRING interaction network
"Bra001888" - AT3G22845 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001888AT3G22845 (E=3e-107) | emp24/gp25L/p24 protein-related (219 aa)    
Predicted Functional Partners:
Bra036221
AT3G29070 (E=3e-077) | protein transmembrane transporter (216 aa)
     
  0.981
Bra034146
AT3G10780 (E=6e-054) | emp24/gp25L/p24 family protein (197 aa)
     
  0.981
Bra033081
AT3G29070 (E=4e-074) | protein transmembrane transporter (222 aa)
     
  0.981
Bra031678
AT1G09580 (E=2e-019) | emp24/gp25L/p24 family protein (160 aa)
     
  0.981
Bra029868
AT3G10780 (E=4e-075) | emp24/gp25L/p24 family protein (210 aa)
     
  0.981
Bra026559
AT2G03290 (E=7e-083) | protein transmembrane transporter (216 aa)
     
  0.981
Bra024781
AT2G03290 (E=2e-090) | protein transmembrane transporter (214 aa)
     
  0.981
Bra017957
AT1G21900 (E=2e-034) | emp24/gp25L/p24 family protein (311 aa)
     
  0.981
Bra016715
AT1G14010 (E=2e-072) | emp24/gp25L/p24 family protein (201 aa)
     
  0.981
Bra016401
AT1G21900 (E=4e-064) | emp24/gp25L/p24 family protein (242 aa)
     
  0.981
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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