STRINGSTRING
Bra001894 protein (Brassica rapa) - STRING interaction network
"Bra001894" - AT3G22942 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001894AT3G22942 (E=2e-038) AGG2 | AGG2 (G-PROTEIN GAMMA SUBUNIT 2) (101 aa)    
Predicted Functional Partners:
Bra011536
AT4G34460 (E=6e-207) AGB1, ELK4, ATAGB1 | AGB1 (GTP BINDING PROTEIN BETA 1); GTPase/ nucleotide binding / protein binding (377 aa)
       
 
  0.951
Bra034628
AT4G34460 (E=6e-191) AGB1, ELK4, ATAGB1 | AGB1 (GTP BINDING PROTEIN BETA 1); GTPase/ nucleotide binding / protein binding (378 aa)
       
 
  0.831
Bra017658
AT4G34460 (E=1e-193) AGB1, ELK4, ATAGB1 | AGB1 (GTP BINDING PROTEIN BETA 1); GTPase/ nucleotide binding / protein binding (378 aa)
       
 
  0.792
Bra034623
AT4G34390 (E=1e-315) XLG2 | XLG2 (extra-large GTP-binding protein 2); guanyl nucleotide binding / signal transducer (834 aa)
       
 
  0.724
Bra007761
AT2G26300 (E=2e-198) GPA1, GP ALPHA 1, ATGPA1 | GP ALPHA 1 (G PROTEIN ALPHA SUBUNIT 1); GTP binding / GTPase/ channel regulator/ signal transducer (380 aa)
       
 
  0.627
Bra031014
AT1G18080 (E=1e-186) ATARCA, RACK1A_AT | ATARCA; nucleotide binding (327 aa)
       
 
  0.622
Bra038055
AT4G12720 (E=7e-135) AtNUDT7, GFG1 | NUDT7; ADP-ribose diphosphatase/ NAD or NADH binding / hydrolase/ nucleoside-diphosphatase/ protein homodimerization (279 aa)
       
      0.617
Bra012746
AT4G12720 (E=2e-132) AtNUDT7, GFG1 | NUDT7; ADP-ribose diphosphatase/ NAD or NADH binding / hydrolase/ nucleoside-diphosphatase/ protein homodimerization (277 aa)
       
      0.617
Bra020705
AT5G48380 (E=1e-228) | leucine-rich repeat family protein / protein kinase family protein (552 aa)
       
 
  0.615
Bra037006
AT4G33430 (E=2e-226) BAK1, RKS10, SERK3, ELG, ATSERK3, ATBAK1 | BAK1 (BRI1-ASSOCIATED RECEPTOR KINASE); kinase/ protein binding / protein heterodimerization/ protein serine/threonine kinase (479 aa)
       
      0.615
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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