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Bra001896 protein (Brassica rapa) - STRING interaction network
"Bra001896" - AT3G22960 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001896AT3G22960 (E=6e-270) PKP1, PKP-ALPHA | PKP-ALPHA; pyruvate kinase (565 aa)    
Predicted Functional Partners:
Bra023072
AT2G36530 (E=9e-250) LOS2 | LOS2; copper ion binding / phosphopyruvate hydratase (444 aa)
   
  0.995
Bra018378
AT2G29560 (E=1e-259) | enolase, putative (475 aa)
   
  0.995
Bra015942
AT1G74030 (E=8e-263) | enolase, putative (478 aa)
   
  0.995
Bra027452
AT5G42740 (E=6e-182) | glucose-6-phosphate isomerase, cytosolic (PGIC) (542 aa)
   
 
  0.985
Bra019214
AT4G24620 (E=0.0) PGI1, PGI | PGI1 (PHOSPHOGLUCOSE ISOMERASE 1); glucose-6-phosphate isomerase (613 aa)
   
 
  0.985
Bra013819
AT4G24620 (E=1e-314) PGI1, PGI | PGI1 (PHOSPHOGLUCOSE ISOMERASE 1); glucose-6-phosphate isomerase (616 aa)
   
 
  0.985
Bra025920
AT1G18270 (E=0.0) | ketose-bisphosphate aldolase class-II family protein (1340 aa)
   
 
  0.984
Bra024064
AT2G36530 (E=2e-029) LOS2 | LOS2; copper ion binding / phosphopyruvate hydratase (188 aa)
   
  0.977
Bra017231
AT2G36530 (E=3e-151) LOS2 | LOS2; copper ion binding / phosphopyruvate hydratase (476 aa)
   
  0.977
Bra006961
AT2G36530 (E=4e-094) LOS2 | LOS2; copper ion binding / phosphopyruvate hydratase (219 aa)
   
  0.977
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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