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Bra001898 protein (Brassica rapa) - STRING interaction network
"Bra001898" - AT3G22980 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001898AT3G22980 (E=4e-020) | elongation factor Tu family protein (71 aa)    
Predicted Functional Partners:
Bra040980
ATCG00780 (E=1e-038) RPL14 | encodes a chloroplast ribosomal protein L14, a constituent of the large subunit of the ribosomal complex (171 aa)
   
  0.999
Bra040978
ATCG00740 (E=1e-124) RPOA | RNA polymerase alpha subunit (475 aa)
   
 
  0.999
Bra015131
AT2G04040 (E=8e-223) ATDTX1, TX1 | TX1; antiporter/ multidrug efflux pump/ multidrug transporter/ transporter (761 aa)
   
  0.999
Bra037493
AT5G39740 (E=2e-131) OLI7, RPL5B | 60S ribosomal protein L5 (RPL5B) (313 aa)
   
  0.998
Bra014131
AT1G48350 (E=2e-087) | ribosomal protein L18 family protein (171 aa)
   
  0.998
Bra013215
AT3G25520 (E=1e-134) ATL5, PGY3, OLI5, RPL5A | ATL5 (A. THALIANA RIBOSOMAL PROTEIN L5); 5S rRNA binding / structural constituent of ribosome (332 aa)
   
  0.998
Bra007144
AT1G48350 (E=2e-024) | ribosomal protein L18 family protein (181 aa)
   
  0.998
Bra012580
AT4G18730 (E=2e-093) RPL16B | RPL16B; structural constituent of ribosome (182 aa)
   
  0.996
Bra021990
AT4G18730 (E=7e-093) RPL16B | RPL16B; structural constituent of ribosome (182 aa)
   
  0.996
Bra017591
AT5G45775 (E=6e-079) | 60S ribosomal protein L11 (RPL11D) (178 aa)
   
  0.996
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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