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Bra001899 protein (Brassica rapa) - STRING interaction network
"Bra001899" - AT3G23030 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurence
Coexpression
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Databases
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[Homology]
Score
Bra001899AT3G23030 (E=1e-081) IAA2 | IAA2 (INDOLE-3-ACETIC ACID INDUCIBLE 2); transcription factor ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (171 aa)    
Predicted Functional Partners:
ARF5-1
AT1G19850 (E=0.0) MP, ARF5, IAA24 | MP (MONOPTEROS); transcription factor ; Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5’-TGTCTC-3’ found in the auxin-responsive promoter elements (AuxREs) (867 aa)
       
  0.982
ARF19-2
AT1G19220 (E=4e-261) ARF19, IAA22, ARF11 | ARF19 (AUXIN RESPONSE FACTOR 19); DNA binding / transcription factor ; Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5’-TGTCTC-3’ found in the auxin-responsive promoter elements (AuxREs) (1049 aa)
       
  0.982
ARF7-2
AT1G19220 (E=2e-284) ARF19, IAA22, ARF11 | ARF19 (AUXIN RESPONSE FACTOR 19); DNA binding / transcription factor ; Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5’-TGTCTC-3’ found in the auxin-responsive promoter elements (AuxREs) (1100 aa)
       
  0.971
Bra002327
AT5G20730 (E=5e-264) NPH4, MSG1, IAA21, ARF7, TIR5, BIP | NPH4 (NON-PHOTOTROPHIC HYPOCOTYL); DNA binding / transcription activator/ transcription factor/ transcription regulator ; Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5’-TGTCTC-3’ found in the auxin-responsive promoter elements (AuxREs) (1439 aa)
       
  0.971
Bra026755
AT1G15580 (E=4e-071) IAA5, ATAUX2-27, AUX2-27 | IAA5 (INDOLE-3-ACETIC ACID INDUCIBLE 5); transcription factor ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (156 aa)
     
 
0.965
Bra040476
AT2G46990 (E=1e-070) IAA20 | IAA20 (INDOLE-3-ACETIC ACID INDUCIBLE 20); transcription factor ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (174 aa)
       
 
0.965
Bra026166
AT1G15050 (E=5e-045) IAA34 | IAA34 (INDOLE-3-ACETIC ACID INDUCIBLE 34); transcription factor ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (164 aa)
       
 
  0.964
Bra010776
AT1G30330 (E=3e-247) ARF6 | ARF6 (AUXIN RESPONSE FACTOR 6); transcription factor ; Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5’-TGTCTC-3’ found in the auxin-responsive promoter elements (AuxREs) (832 aa)
       
 
  0.964
Bra002729
AT5G57420 (E=7e-038) IAA33 | IAA33 (INDOLE-3-ACETIC ACID INDUCIBLE 33); transcription factor ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (160 aa)
       
 
  0.964
ARF8-2
AT5G37020 (E=1e-219) ARF8, ATARF8 | ARF8 (AUXIN RESPONSE FACTOR 8); transcription factor ; Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5’-TGTCTC-3’ found in the auxin-responsive promoter elements (AuxREs) (844 aa)
       
 
  0.964
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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