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Bra001900 protein (Brassica rapa) - STRING interaction network
"Bra001900" - AT3G23050 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
Bra001900AT3G23050 (E=2e-110) IAA7, AXR2 | IAA7 (INDOLE-3-ACETIC ACID 7); transcription factor ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (237 aa)    
Predicted Functional Partners:
Bra016492
AT1G19850 (E=2e-224) MP, ARF5, IAA24 | MP (MONOPTEROS); transcription factor ; Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5’-TGTCTC-3’ found in the auxin-responsive promoter elements (AuxREs) (836 aa)
       
  0.994
ARF5-1
AT1G19850 (E=0.0) MP, ARF5, IAA24 | MP (MONOPTEROS); transcription factor ; Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5’-TGTCTC-3’ found in the auxin-responsive promoter elements (AuxREs) (867 aa)
       
  0.994
ARF11
AT2G46530 (E=4e-271) ARF11 | ARF11 (AUXIN RESPONSE FACTOR 11); transcription factor ; Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5’-TGTCTC-3’ found in the auxin-responsive promoter elements (AuxREs) (584 aa)
       
0.981
Bra002729
AT5G57420 (E=7e-038) IAA33 | IAA33 (INDOLE-3-ACETIC ACID INDUCIBLE 33); transcription factor ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (160 aa)
       
 
  0.974
Bra027504
AT5G43700 (E=6e-090) ATAUX2-11, IAA4 | ATAUX2-11 (AUXIN INDUCIBLE 2-11); DNA binding / transcription factor ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (191 aa)
     
 
0.973
Bra030560
AT1G04250 (E=4e-119) AXR3, IAA17 | AXR3 (AUXIN RESISTANT 3); transcription factor ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (229 aa)
       
 
0.973
Bra011045
AT4G28640 (E=2e-093) IAA11 | IAA11 (INDOLE-3-ACETIC ACID INDUCIBLE 11); transcription factor ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (243 aa)
       
 
0.973
Bra015289
AT1G04100 (E=2e-064) IAA10 | IAA10; transcription factor ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (271 aa)
       
 
0.973
Bra015326
AT1G04550 (E=1e-084) IAA12, BDL | IAA12 (AUXIN-INDUCED PROTEIN 12); transcription factor/ transcription repressor ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (235 aa)
       
 
0.973
Bra035185
AT1G80390 (E=5e-065) IAA15 | IAA15 (INDOLE-3-ACETIC ACID INDUCIBLE 15); transcription factor ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (188 aa)
       
 
0.973
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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