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Bra001901 protein (Brassica rapa) - STRING interaction network
"Bra001901" - AT3G23060 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001901AT3G23060 (E=8e-036) | zinc finger (C3HC4-type RING finger) family protein (463 aa)    
Predicted Functional Partners:
Bra033732
AT1G03770 (E=1e-093) ATRING1B, RING1B | RING1B (RING 1B); protein binding / zinc ion binding (524 aa)
       
  0.967
Bra027538
AT5G44280 (E=2e-122) ATRING1A, RING1A | RING1A (RING 1A); protein binding / zinc ion binding (504 aa)
       
  0.967
Bra015262
AT5G44280 (E=6e-058) ATRING1A, RING1A | RING1A (RING 1A); protein binding / zinc ion binding (328 aa)
       
  0.967
Bra014602
AT3G57870 (E=6e-092) AHUS5, EMB1637, SCE1, SCE1A, ATSCE1 | SCE1 (SUMO CONJUGATION ENZYME 1); SUMO ligase (160 aa)
       
    0.750
Bra014406
AT3G57870 (E=6e-081) AHUS5, EMB1637, SCE1, SCE1A, ATSCE1 | SCE1 (SUMO CONJUGATION ENZYME 1); SUMO ligase (160 aa)
       
    0.750
Bra007363
AT3G57870 (E=1e-077) AHUS5, EMB1637, SCE1, SCE1A, ATSCE1 | SCE1 (SUMO CONJUGATION ENZYME 1); SUMO ligase (160 aa)
       
    0.750
Bra003301
AT3G57870 (E=7e-078) AHUS5, EMB1637, SCE1, SCE1A, ATSCE1 | SCE1 (SUMO CONJUGATION ENZYME 1); SUMO ligase (160 aa)
       
    0.750
Bra022904
AT2G32790 (E=8e-052) | ubiquitin-conjugating enzyme, putative (180 aa)
     
    0.715
Bra041101
AT3G08690 (E=8e-085) UBC11, ATUBC11 | UBC11 (UBIQUITIN-CONJUGATING ENZYME 11); ubiquitin-protein ligase (148 aa)
       
    0.715
Bra036549
AT5G25760 (E=2e-085) PEX4, UBC21 | PEX4 (PEROXIN4); protein binding / ubiquitin-protein ligase (190 aa)
       
    0.715
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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