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Bra001913 protein (Brassica rapa) - STRING interaction network
"Bra001913" - AT3G23440 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001913AT3G23440 (E=7e-038) EDA6, MEE37 | EDA6 (EMBRYO SAC DEVELOPMENT ARREST 6) (119 aa)    
Predicted Functional Partners:
Bra036442
AT3G03690 (E=4e-141) UNE7 | UNE7 (unfertilized embryo sac 7); acetylglucosaminyltransferase/ transferase, transferring glycosyl groups (281 aa)
           
  0.473
Bra007291
AT3G56990 (E=0.0) EDA7 | EDA7 (embryo sac development arrest 7) (725 aa)
           
  0.418
Bra036430
AT3G03810 (E=0.0) EDA30 | EDA30 (embryo sac development arrest 30) (656 aa)
           
  0.406
Bra034907
AT4G12860 (E=6e-069) UNE14 | UNE14 (unfertilized embryo sac 14); calcium ion binding (152 aa)
           
  0.406
Bra033825
AT3G46330 (E=0.0) MEE39 | MEE39 (maternal effect embryo arrest 39); kinase (880 aa)
           
  0.406
Bra032302
AT1G29300 (E=3e-175) UNE1 | UNE1 (unfertilized embryo sac 1) (449 aa)
           
  0.406
Bra007752
AT2G26460 (E=4e-144) | RED family protein (572 aa)
           
  0.406
Bra005381
AT2G34920 (E=9e-191) EDA18 | EDA18 (embryo sac development arrest 18); protein binding / zinc ion binding (648 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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