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Bra001914 protein (Brassica rapa) - STRING interaction network
"Bra001914" - AT3G23530 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra001914AT3G23530 (E=0.0) | cyclopropane fatty acid synthase, putative / CPA-FA synthase, putative (876 aa)    
Predicted Functional Partners:
Bra010795
AT1G30130 (E=4e-137) | unknown protein (306 aa)
 
     
  0.773
Bra041076
AT5G50590 (E=1e-152) AtHSD4 | AtHSD4 (hydroxysteroid dehydrogenase 4); binding / catalytic/ oxidoreductase (299 aa)
         
  0.715
Bra040871
AT3G55290 (E=2e-122) | short-chain dehydrogenase/reductase (SDR) family protein (278 aa)
         
  0.715
Bra039977
AT2G29350 (E=6e-075) SAG13 | SAG13; alcohol dehydrogenase/ oxidoreductase (193 aa)
         
  0.715
Bra039976
AT2G29350 (E=5e-120) SAG13 | SAG13; alcohol dehydrogenase/ oxidoreductase (271 aa)
         
  0.715
Bra039974
AT2G30670 (E=1e-112) | tropinone reductase, putative / tropine dehydrogenase, putative (263 aa)
         
  0.715
Bra039973
AT2G29300 (E=2e-125) | tropinone reductase, putative / tropine dehydrogenase, putative (262 aa)
         
  0.715
Bra039971
AT2G29340 (E=1e-126) | short-chain dehydrogenase/reductase (SDR) family protein (262 aa)
         
  0.715
Bra039969
AT2G30670 (E=7e-115) | tropinone reductase, putative / tropine dehydrogenase, putative (263 aa)
         
  0.715
Bra039967
AT2G29300 (E=6e-124) | tropinone reductase, putative / tropine dehydrogenase, putative (262 aa)
         
  0.715
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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